rs368989 chr22:21002249 A>T
- Sequence
gcggcgcgagcgtgcgagtttctg[A/T]cgcgcccgcgtcgtcccagctccc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- FOXK2_HUMAN ENL_HUMAN TIF1A_HUMAN PF21A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | n/a | 3.11 | 3.78 | n/a | n/a | |||
| ENL_HUMAN | n/a | 2.95 | 4.50 | n/a | n/a | |||
| TIF1A_HUMAN | n/a | 2.48 | 4.00 | n/a | n/a | |||
| PF21A_HUMAN | n/a | 2.66 | 4.00 | n/a | n/a | |||
| P66B_HUMAN | n/a | 3.93 | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood