rs369106 chr19:44002778 C>T
- Sequence
attttcctttggcattggaggaag[C/T]ggagtccagacacactctgagtcg
- ASB in cell types
- HEK293 (embryonic kidney) CUTLL1 (T-cell lymphoblastic lymphoma 1) A549 (lung carcinoma)
- ASB for transcription factors
- Z518A_HUMAN ZN143_HUMAN ZN394_HUMAN ZBTB6_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| Z518A_HUMAN | n/a | 2.54 | 5.00 | n/a | n/a | |||
| ZN143_HUMAN | n/a | 2.44 | 2.50 | 2.02 | Concordant | |||
| ZN394_HUMAN | n/a | 2.60 | 4.00 | n/a | No Hit | |||
| ZBTB6_HUMAN | n/a | 2.31 | 5.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood