rs37025 chr16:56932099 G>A
- Sequence
acagagcgttctgtccgcagagcc[G/A]ggcgcggggcttctataaaaggcg
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) foreskin keratinocyte GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.45 | 1.56 | 1.49 | n/a | No Hit | |||
| JUN_HUMAN | -0.13 | 1.24 | 1.90 | n/a | No Hit | |||
| HTF4_HUMAN | 1.98 | -1.71 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Thyroid