ADASTRA v1.6.10
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rs372535
chr19:48107546
T
>
C
Sequence
gggtaacgccagcgtctgggaaga[T/C]gcccattgcctagcggaccttggt
ASB in cell types
HepG2 (hepatoblastoma)
CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN
RAD21_HUMAN
HLF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN
0.99
-2.61
0.01
1.00
2.50
n/a
No Hit
RAD21_HUMAN
1.30
0.42
0.03
1.00
1.39
n/a
n/a
HLF_HUMAN
1.92
-2.39
0.04
1.00
1.50
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Lung
,
Minor_Salivary_Gland
,
Nerve_Tibial
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)