rs372648 chr17:58659424 A>C
- Sequence
gaaactaccgcttcttcgtatgac[A/C]catctcagactacaccttctttgg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) foreskin keratinocyte
- ASB for transcription factors
- SUZ12_HUMAN CREB1_HUMAN FOXA1_HUMAN ETV6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SUZ12_HUMAN | n/a | 0.80 | 6.00 | n/a | n/a | |||
| CREB1_HUMAN | 0.12 | 0.52 | 3.08 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.23 | 1.12 | 2.81 | n/a | No Hit | |||
| ETV6_HUMAN | -2.50 | 2.40 | 1.33 | n/a | n/a | |||
| EGR1_HUMAN | 1.95 | -1.44 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 15
Motif analysis
No data available
Genetic associations
GRASP birth weight, chronic kidney disease, college completion, diastolic blood pressure (dbp), mitral annular calcium, serum creatinine, systolic blood pressure (sbp), years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood