rs3737898 chr1:63367779 G>T
- Sequence
gcgccacgagccggcgcagagctg[G/T]cgacccgtctcccagctccgctcc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) upper lobe of left lung pancreas
- ASB for transcription factors
- CTCF_HUMAN SP3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.54 | 1.91 | 1.33 | n/a | No Hit | |||
| SP3_HUMAN | n/a | 2.20 | 2.00 | -1.62 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid