rs3738263 chr1:201114378 A>G
- Sequence
atcccggggactcgcagagactgg[A/G]ctgcgcctgcggcaaggaaggacg
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 0.67 | 1.55 | n/a | No Hit | |||
| SMC3_HUMAN | 0.02 | 1.25 | 2.03 | n/a | n/a | |||
| RAD21_HUMAN | 0.76 | 1.24 | 1.83 | n/a | n/a | |||
| ZFX_HUMAN | 1.46 | -0.51 | 1.60 | n/a | No Hit | |||
| ZEB2_HUMAN | 2.36 | -3.32 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Vagina, Whole_Blood