rs3738960 chr2:223957326 C>G
- Sequence
cccgccccggggctgtctccgccc[C/G]tgccctctctcagtcgccccgccc
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) MDA-MB-453 (breast adenocarcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- BHE40_HUMAN JUN_HUMAN BCL3_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | n/a | 3.26 | 1.33 | 5.15 | Concordant | |||
| JUN_HUMAN | -0.39 | 1.13 | 1.98 | n/a | No Hit | |||
| BCL3_HUMAN | -0.25 | 1.13 | 1.77 | n/a | n/a | |||
| GABPA_HUMAN | 0.24 | 1.15 | 1.75 | n/a | No Hit | |||
| Z512B_HUMAN | n/a | 1.96 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood