rs37390 chr5:143596453 A>T
- Sequence
actgatgactcatgagaggtgtac[A/T]tatttttctccctttgttcaagcg
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) GM12878 (female B-cells) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- JUN_HUMAN SMC3_HUMAN RAD21_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.62 | 0.17 | 1.96 | n/a | No Hit | |||
| SMC3_HUMAN | 1.38 | -0.52 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.07 | -0.14 | 1.92 | n/a | n/a | |||
| BCL3_HUMAN | 1.32 | -0.15 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | 1.40 | 0.56 | 2.10 | n/a | No Hit |
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