rs3746002 chr19:43619742 G>A
- Sequence
ctatgcgcgtcgggccgtcgacga[G/A]acccgcgcggggggcgccgtgctt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- MEIS2_HUMAN NRF1_HUMAN LMBL2_HUMAN PRD10_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | n/a | 2.71 | 2.00 | n/a | No Hit | |||
| NRF1_HUMAN | -0.31 | 1.65 | 2.15 | 0.63 | Weak Concordant | |||
| LMBL2_HUMAN | n/a | 2.44 | 2.00 | n/a | n/a | |||
| PRD10_HUMAN | n/a | 0.37 | 4.00 | n/a | n/a | |||
| ZN316_HUMAN | -1.09 | 1.71 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood