rs3747570 chr16:4273966 T>C
- Sequence
ttcataacaaagcccgtgtgggac[T/C]tgcccctccgccaggatgcgctcc
- ASB in cell types
- GM12878 (female B-cells) pancreas bipolar neuron Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN BHE40_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.98 | 1.94 | 1.37 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.27 | 1.65 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | -1.68 | 1.96 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood