rs3752042 chr17:80036614 C>A
- Sequence
ggcggcccccgccctcgcagcgcg[C/A]gtggtcccggcccggccggatgtt
- ASB in cell types
- A549 (lung carcinoma) breast tumor tissue Tet21N (neuroblastoma) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- MYCN_HUMAN MYC_HUMAN ESR1_HUMAN MAX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYCN_HUMAN | 1.75 | -1.40 | 2.00 | -6.26 | Concordant | |||
| MYC_HUMAN | 1.41 | -0.38 | 1.46 | -5.27 | Concordant | |||
| ESR1_HUMAN | 1.43 | n/a | 2.50 | n/a | No Hit | |||
| MAX_HUMAN | 1.85 | -0.78 | 2.50 | -5.81 | Concordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood