rs375259 chr4:48341533 C>T
- Sequence
atattggcgccgcctcccccaatc[C/T]cggagccggcgcagatgaggcagt
- ASB in cell types
- K562 (myelogenous leukemia) VCaP (prostate carcinoma) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- BC11B_HUMAN HDAC1_HUMAN EGR1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | 0.92 | n/a | 2.50 | n/a | n/a | |||
| HDAC1_HUMAN | -0.91 | 1.38 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | -2.91 | 1.48 | 2.25 | 0.01 | Weak Concordant | |||
| CTCF_HUMAN | 0.46 | 0.88 | 1.41 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Testis