rs378114 chr20:45909788 T>C
- Sequence
tctttccacacatcctaccaaacc[T/C]tcctatcaactcgtatgaaatgca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- LMBL2_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | n/a | 2.24 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.84 | 0.70 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP coronary artery disease (cad), eye color, hdl cholesterol, ldl cholesterol, neuroblastoma (brain cancer), total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood