rs379463 chr1:75588976 G>A
- Sequence
aagttaatattgacaaagagaaat[G/A]ccagagtttcaggttgaggcttaa
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP (prostate carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- IKZF1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -1.58 | 1.51 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | 0.57 | 0.83 | 1.67 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg