rs3796935 chr4:108620460 T>C
- Sequence
caacgtggtggttccctgcatctc[T/C]gcccacgtcggagaggtgcgtcgg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- TYY1_HUMAN EGR1_HUMAN GABPA_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.96 | -0.52 | 1.52 | n/a | No Hit | |||
| EGR1_HUMAN | 0.76 | 1.68 | 1.67 | 3.32 | Concordant | |||
| GABPA_HUMAN | 1.50 | 0.70 | 1.67 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.58 | -0.32 | 1.78 | n/a | n/a | |||
| CEBPB_HUMAN | 1.38 | -0.22 | 1.83 | n/a | No Hit |
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Motif analysis
