rs3803527 chr15:89362063 T>G
- Sequence
gctcacacgggagccccgggacca[T/G]ccaatccagcgtggatatccccag
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes A549 (lung carcinoma)
- ASB for transcription factors
- REST_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | 1.23 | 0.27 | 1.74 | n/a | No Hit | |||
| SNAI2_HUMAN | 2.30 | -3.17 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood