rs3806661 chr3:12664356 A>G
- Sequence
gcgacgctgacttgctttcaggag[A/G]ggcactcggtaatcgagaagaacc
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) A549 (lung carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- JUN_HUMAN CTCF_HUMAN FOXK2_HUMAN HIF3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.27 | 1.26 | 1.92 | n/a | No Hit | |||
| CTCF_HUMAN | 1.10 | 0.32 | 1.43 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.98 | 1.67 | 1.92 | n/a | n/a | |||
| HIF3A_HUMAN | n/a | 2.65 | 2.50 | n/a | n/a | |||
| HIF1A_HUMAN | n/a | 2.64 | 2.50 | n/a | No Hit |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP college completion, obesity with early age of onset (age >2), salmonella-induced pyroptosis, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid