rs3806919 chr5:181244001 G>A
- Sequence
ttctgctcaagatggcggcgccat[G/A]taatgcaaaaggcagagggaaatt
- ASB in cell types
- GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXK2_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.86 | n/a | 1.67 | n/a | n/a | |||
| TYY1_HUMAN | 0.83 | -0.03 | 1.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood