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rs3809745 chr17:45148227 G>C

Sequence
tgcgattggccgtccttcctcagc[G/C]agtcgtgtgatttttcaccaatgg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
PKNX1_HUMAN PBX2_HUMAN NRF1_HUMAN EGR1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN n/a 3.28 1.002.8·10-11 2.00 n/a No Hit
PBX2_HUMAN -3.45 2.45 1.004.2·10-3 2.00 n/a No Hit
NRF1_HUMAN -0.19 0.64 0.728.7·10-3 1.89 n/a No Hit
EGR1_HUMAN -2.37 1.83 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd hdl cholesterol
GTEx eQTL Adipose_Subcutaneous Artery_Tibial Brain_Cortex Brain_Frontal_Cortex_BA9 Esophagus_Mucosa Esophagus_Muscularis Nerve_Tibial Thyroid Whole_Blood

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