rs3810177 chr19:49031767 T>C
- Sequence
gggcccgagggcacgcgcaaccgg[T/C]cggagccacaatagctcggggtgt
- ASB in cell types
- foreskin keratinocyte H1 (embryonic stem cells)
- ASB for transcription factors
- TBP_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 1.80 | -1.53 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.40 | 1.30 | 1.58 | 0.70 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), fasting blood glucose, irritible bowel syndrome, nonalcoholic fatty liver disease, triglycerides, urinary albumin-to-creatinine ratio
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Pancreas, Testis