rs3810204 chr19:17337851 T>C
- Sequence
tccttctggcctcacagtccctaa[T/C]ccggtcacccttcggccttcagaa
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- SCRT2_HUMAN PRD10_HUMAN TZAP_HUMAN ZN335_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SCRT2_HUMAN | n/a | 2.92 | 2.00 | n/a | n/a | |||
| PRD10_HUMAN | n/a | 2.85 | 2.00 | n/a | n/a | |||
| TZAP_HUMAN | n/a | 2.72 | 2.00 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 2.67 | 2.00 | n/a | No Hit | |||
| SP7_HUMAN | n/a | 2.86 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 32
Motif analysis
Genetic associations
GRASP breast cancer (estrogen receptor negative breast cancer), neuroblastoma (brain cancer), rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood