rs3810276 chr19:50431682 G>A
- Sequence
gcgagggacgcgaggcttcaggtg[G/A]ccgcggcactgcaggcctgggccc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -1.77 | 1.75 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP age at death with kuru exposure, ldl cholesterol, primary biliary cirrhosis, primary biliary cirrhosis (antimitochondrial-antibody positive only)
GTEx eQTL Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid