rs3811406 chr1:151281565 T>C
- Sequence
acctttaggtcccgattccttcca[T/C]gctccaaatcccgtgccccgtcca
- ASB in cell types
- GM12878 (female B-cells) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- NFXL1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFXL1_HUMAN | -2.03 | 1.95 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.31 | 0.64 | 1.29 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, ldl cholesterol, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood