rs3812472 chr8:124474526 A>G
- Sequence
gcaccgactcgctcgctaagccga[A/G]tctgcgagggtgaagctgcaactc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) pancreas GM12878 (female B-cells)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN ZN217_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.37 | 0.95 | 1.67 | n/a | No Hit | |||
| BCL3_HUMAN | -0.18 | 1.32 | 1.57 | n/a | n/a | |||
| ZN217_HUMAN | 1.10 | 1.20 | 1.39 | n/a | n/a | |||
| CTCF_HUMAN | 0.47 | 1.62 | 1.30 | n/a | No Hit | |||
| P66B_HUMAN | 0.41 | 1.85 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood