rs3813321 chr5:138464335 C>T
- Sequence
cgcgcccagcccggggtccccaga[C/T]agcccatagggaagcccctctttc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN CLOCK_HUMAN TBX21_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.87 | 0.34 | 2.00 | n/a | No Hit | |||
| CLOCK_HUMAN | -0.74 | 2.12 | 2.25 | n/a | No Hit | |||
| TBX21_HUMAN | 1.39 | -0.22 | 1.33 | n/a | No Hit | |||
| MNT_HUMAN | 1.62 | 0.31 | 2.07 | n/a | n/a | |||
| HDAC1_HUMAN | 1.77 | 0.03 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Pituitary