rs3813685 chr6:24720812 G>C
- Sequence
agcggcgaaggcctcgggcgcctc[G/C]cgggtccggggcagagtcgcgttt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) Th2-cells HCT-116 (colon carcinoma)
- ASB for transcription factors
- ZBTB5_HUMAN HINFP_HUMAN MAF_HUMAN C2D1A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBTB5_HUMAN | n/a | 2.85 | 3.00 | n/a | n/a | |||
| HINFP_HUMAN | n/a | 3.03 | 2.50 | n/a | No Hit | |||
| MAF_HUMAN | -4.02 | 2.05 | 2.50 | n/a | No Hit | |||
| C2D1A_HUMAN | n/a | 2.54 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Whole_Blood