rs3817990 chr11:34359180 A>G
- Sequence
cgcaaacggacctgtgccccctcc[A/G]gtggaaccgcaggctcaaggcggg
- ASB in cell types
- liver HCT-116 (colon carcinoma) tibial nerve HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.94 | 0.27 | 1.31 | -1.58 | Weak Concordant | |||
| RAD21_HUMAN | 1.41 | -0.59 | 1.27 | n/a | n/a | |||
| SMC3_HUMAN | 1.06 | -0.32 | 1.50 | n/a | n/a | |||
| EP300_HUMAN | 1.87 | 0.19 | 1.22 | n/a | n/a | |||
| RXRA_HUMAN | 1.44 | -0.49 | 1.33 | n/a | No Hit |
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Motif analysis
