rs3820419 chr1:200889187 T>G
- Sequence
tcttctaaaggtcagtttgcccag[T/G]tcatctcctgggtcaacgtttttc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) HEK293 (embryonic kidney)
- ASB for transcription factors
- ESR1_HUMAN CREB1_HUMAN NFIB_HUMAN ZN579_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.70 | 2.35 | 2.02 | n/a | No Hit | |||
| CREB1_HUMAN | n/a | 2.18 | 2.50 | n/a | No Hit | |||
| NFIB_HUMAN | -3.51 | 2.22 | 2.50 | n/a | n/a | |||
| ZN579_HUMAN | n/a | 2.72 | 2.00 | n/a | n/a | |||
| AHR_HUMAN | -0.60 | 1.54 | 2.00 | n/a | No Hit |
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