rs383228 chr1:40391858 A>C
- Sequence
tggttgttgcaaagaggaagttaa[A/C]ctgaagtaacctaaaaatgtaaag
- ASB in cell types
- GM12878 (female B-cells) K562 (myelogenous leukemia) LNCaP C4-2 (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells) | 0.70 | 0.37 | 1.32 | |||
| K562 (myelogenous leukemia) | 0.18 | 0.47 | 1.31 | |||
| LNCaP C4-2 (prostate carcinoma) | -1.69 | 1.52 | 1.33 |
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