rs38415 chr7:30505131 G>C
- Sequence
gctgaaggtcgtggcgcgtgactg[G/C]tttcttcgctctggggtgcttgtg
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) SK-BR-3 (breast adenocarcinoma) CD14+ monocytes
- ASB for transcription factors
- BCL3_HUMAN ERR1_HUMAN STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL3_HUMAN | -0.58 | 1.20 | 2.00 | n/a | n/a | |||
| ERR1_HUMAN | -0.81 | 1.54 | 2.40 | n/a | No Hit | |||
| STAT1_HUMAN | -0.70 | 1.68 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | n/a | 2.32 | 2.50 | n/a | No Hit | |||
| BHE40_HUMAN | -1.23 | 1.01 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood