rs3845511 chr1:246139992 C>T
- Sequence
caatgacacagttctccctttcat[C/T]aagatattcttttcatcatgtatt
- ASB in cell types
- HCT-116 (colon carcinoma) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- GATA3_HUMAN SP1_HUMAN PBX3_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | 1.62 | -0.62 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 1.47 | -1.11 | 1.33 | n/a | No Hit | |||
| PBX3_HUMAN | 1.59 | -0.67 | 1.33 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.23 | -0.51 | 1.33 | n/a | No Hit | |||
| FOSL1_HUMAN | 1.41 | -0.75 | 1.33 | n/a | No Hit |
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