rs385540 chr10:117443100 G>C
- Sequence
ggggcagcacccaacctatgctca[G/C]gcaactggcgctttctcctgggac
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) HeLa S3 (cervical adenocarcinoma) NB69 (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.19 | 1.59 | n/a | No Hit | |||
| RAD21_HUMAN | 1.17 | -0.48 | 1.69 | n/a | n/a | |||
| SMC3_HUMAN | 1.24 | 0.20 | 1.92 | n/a | n/a | |||
| GABP1_HUMAN | 1.84 | -1.73 | 1.33 | n/a | n/a |
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