rs3855972 chr1:54348547 A>G
- Sequence
ctcccacagtgagaataccagccc[A/G]cttccgtccaggggttgggcttta
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- RARA_HUMAN GABPA_HUMAN ETV5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.89 | -1.78 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.15 | n/a | 1.33 | -1.95 | Weak Concordant | |||
| ETV5_HUMAN | 1.97 | -1.62 | 1.33 | n/a | No Hit |
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Motif analysis
