rs386274 chr20:56455025 C>A
- Sequence
gacagggctaaataggactgactc[C/A]gttcctctttgacattctgattta
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- SPI1_HUMAN MTA2_HUMAN PKNX1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -2.37 | 2.28 | 1.33 | 3.72 | Concordant | |||
| MTA2_HUMAN | -2.45 | 2.13 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | n/a | 1.97 | 1.75 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.06 | 1.64 | 2.67 | n/a | No Hit | |||
| MEF2B_HUMAN | -1.99 | 1.78 | 1.50 | n/a | No Hit |
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Motif analysis
