rs386713 chr6:2841905 C>T
- Sequence
cgctgctcttatagcaggcggaag[C/T]gtcacccgggccagcagccgcggg
- ASB in cell types
- Th1-cells CD14+ monocytes periferal blood macrophages cranial neural crest cells
- ASB for transcription factors
- STAT1_HUMAN TBX21_HUMAN SPI1_HUMAN AP2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 2.98 | 2.50 | n/a | No Hit | |||
| TBX21_HUMAN | -0.90 | 1.11 | 1.39 | 5.44 | Concordant | |||
| SPI1_HUMAN | -3.42 | 1.93 | 2.50 | 2.34 | Concordant | |||
| AP2A_HUMAN | 1.91 | -1.38 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | -3.76 | 2.16 | 2.50 | 2.41 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Pituitary, Testis, Thyroid, Whole_Blood