rs3897962 chr10:2137792 A>C
- Sequence
agcctcataaccttatcaaaacct[A/C]atcacctcccaaggtctcacctcc
- ASB in cell types
- foreskin keratinocyte MCF10A (breast epithelial cells) MCF10CA1a (breast metastatic epithelial cells) MCF10AT1 (breast premetastatic epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.97 | 0.10 | 1.48 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, hdl cholesterol, height