rs3918149 chr6:32968596 G>A
- Sequence
cacccttgcgcctgcgctgtgtgt[G/A]ttcctggtctgcggcagccatgct
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) upper lobe of left lung
- ASB for transcription factors
- NRF1_HUMAN FOXK2_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | -0.98 | 1.83 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.99 | 0.74 | 1.67 | n/a | n/a | |||
| GABPA_HUMAN | -1.33 | 1.36 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hiv-1 control (viral load at set point), ldl cholesterol, microalbuminuria, rheumatoid arthritis, total cholesterol, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood