rs393461 chr16:3189518 C>T
- Sequence
cacacccatcctcacttgaaattg[C/T]cccttccaggcgggtctgaaataa
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- C2D1A_HUMAN HDAC1_HUMAN ATF7_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| C2D1A_HUMAN | n/a | 2.46 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.99 | 1.54 | 2.00 | n/a | n/a | |||
| ATF7_HUMAN | -1.77 | 1.53 | 1.67 | n/a | n/a | |||
| GABP1_HUMAN | n/a | 2.22 | 2.00 | n/a | n/a | |||
| ZBT40_HUMAN | -0.80 | 1.63 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Frontal_Cortex_BA9, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood