rs397553 chr20:43657442 G>A
- Sequence
cgaacgagaccacgccaccgagaa[G/A]aagcctctggggcgcggggctggt
- ASB in cell types
- HEK293 (embryonic kidney) cranial neural crest cells LNCaP C4-2B (prostate carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- PRD10_HUMAN ESR1_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | n/a | 2.69 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 2.34 | 2.50 | n/a | No Hit | |||
| AP2A_HUMAN | 1.61 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood