rs398377 chr4:2009246 T>G
- Sequence
ccgtaaaacatcatggcggcgccc[T/G]ctgctggctctcgggaagaccgca
- ASB in cell types
- pancreas upper lobe of left lung transverse colon prostate gland
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN TYY1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.67 | -0.20 | 1.67 | -7.46 | Concordant | |||
| CREB1_HUMAN | 1.13 | 0.02 | 1.42 | n/a | No Hit | |||
| TYY1_HUMAN | 2.33 | 0.43 | 1.44 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.03 | -0.22 | 1.42 | n/a | n/a | |||
| STAT1_HUMAN | 1.33 | -3.16 | 2.50 | n/a | No Hit |
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Motif analysis
