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rs400181 chr8:26577607 C>T

Sequence
ccccgccgtctcggggtgccgccc[C/T]tccccccggccgcgacgaccaccc
ASB in cell types
foreskin keratinocyte GM12878 (female B-cells) K562 (myelogenous leukemia)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.29 3.32 0.971.8·10-8 1.71 -0.33 Weak Discordant
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

No data available

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