rs400547 chr6:31734933 C>T
- Sequence
gcagctaaggctacccctaacctg[C/T]tgccagggtctcccagcacaagtc
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor tissue CD14+ monocytes MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- MEIS2_HUMAN MGAP_HUMAN MTG16_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | n/a | 0.86 | 3.00 | n/a | No Hit | |||
| MGAP_HUMAN | n/a | 2.93 | 3.00 | n/a | n/a | |||
| MTG16_HUMAN | n/a | 2.55 | 3.00 | n/a | n/a | |||
| ATF3_HUMAN | n/a | 1.95 | 3.00 | n/a | No Hit | |||
| SMAD5_HUMAN | n/a | 2.71 | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 25
Motif analysis
Genetic associations
GRASP hdl cholesterol, infant head circumference, parkinsons disease, rheumatoid arthritis, serum creatinine, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood