rs400837 chr6:166997520 T>C
- Sequence
cttgcaaaactaaccaaacacata[T/C]aaagcgcaaacagtacaatagtgc
- ASB in cell types
- K562 (myelogenous leukemia) liver
- ASB for transcription factors
- HNF4A_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -0.60 | 1.14 | 1.33 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.58 | -1.73 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP crohns disease, graves disease, hypothyroidism, ldl cholesterol, rheumatoid arthritis, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood