rs401379 chr20:46406574 T>C
- Sequence
gggcgcagacctaggcccagctcc[T/C]gctcccgggtctccgctcggcggc
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) hMADS-3 (adipose-derived stem cells)
- ASB for transcription factors
- PRD10_HUMAN ZFHX2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | -2.97 | 2.20 | 2.00 | n/a | n/a | |||
| ZFHX2_HUMAN | -3.68 | 2.08 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Heart_Atrial_Appendage, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg