rs40156 chr5:66864457 C>T
- Sequence
atccagacaggccgccaggctgga[C/T]ccagagagtagagggaagggcagg
- ASB in cell types
- 22RV1 (prostate carcinoma) PANC1 (pancreatic ductal adenocarcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.54 | -0.02 | 1.42 | -1.98 | Weak Concordant |
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Motif analysis
