rs402511 chr5:177007439 G>A
- Sequence
gttcaaggaggccagcttcctggc[G/A]gaaaatgtgaacagcagaaatgtc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.81 | -0.15 | 2.00 | |||
| GM12878 (female B-cells) | 0.46 | 0.26 | 1.27 |
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Motif analysis
No data available
Genetic associations
GRASP age at menopause, endometriosis, hdl cholesterol change with statins, height, hypertension (early onset hypertension), infant head circumference, late onset alzheimers disease, plasma aldosterone concentration
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood