rs4075047 chr15:63048408 T>C
- Sequence
gtttgtctgcgcagccctggaggc[T/C]gcgacttccggactgctcctggcc
- ASB in cell types
- A549 (lung carcinoma) cranial neural crest cells NB69 (neuroblastoma) foreskin keratinocyte
- ASB for transcription factors
- AP2A_HUMAN BC11B_HUMAN STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.63 | n/a | 2.00 | -0.78 | Weak Concordant | |||
| BC11B_HUMAN | n/a | 2.79 | 2.50 | n/a | n/a | |||
| STAT1_HUMAN | 0.95 | -3.10 | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 1.44 | n/a | 2.50 | n/a | No Hit | |||
| RAD21_HUMAN | 0.64 | 0.05 | 1.23 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP college completion, hdl cholesterol, height, ldl cholesterol, refractive error, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Transverse, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood