rs4076544 chr10:34763284 T>G
- Sequence
cttgagctcataaacacaaagtat[T/G]tttgcccagtgttgacagtgcatg
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN BCL6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -2.09 | 2.32 | 1.33 | 5.07 | Concordant | |||
| BCL6_HUMAN | -3.13 | 2.43 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP autism, body mass index (bmi), hdl cholesterol, late onset alzheimers disease, ldl cholesterol change with statins, maternal transmission distortion, mitral annular calcium, paternal transmission distortion, serum creatinine, spine bone mineral density (bmd), total cholesterol change with statins, transmission distortion, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid