ADASTRA v1.6.10
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rs409238
chr2:182852373
G
>
A
Sequence
agcacctttggaacagcgccaaga[G/A]caggttagtgaaaactctgggaga
ASB in cell types
HEK293T (embryonic kidney)
ASB for transcription factors
PKNX1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN
1.92
-0.33
0.03
1.00
1.50
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
,
college completion
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Lung
,
Nerve_Tibial
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)